icy.bioimageanalysis.org– Open Source Image Processing Software

Resources Support Contributors Get Involved About Search Login Create Account Username or Email Address Password Remember Me Icy An open community platform for bioimage informatics Download Icy Active Contours 3D elevation map VTK 3D rendering 3D segmentation Tracking 3D Spot Detection SODA BioFlow Filter by type Plugin Script Protocol FAQ Forum Topic Article Filter by category 3-D 3D 3D coordinates alignment basics batch processing Calcium cell tracking CLEM colocalization comptage confocal connected components contribution convolution correlation deconvolution deformable registration denoising detection detector developer displacements distance map export ezplug feature detection feature matching filtering fluorescence gui headless helper HSV visualisation image process ImageJ intensity mask maven measurement MHT microscopy monitoring morphology multiple hypothesis tracking non rigid registration operator optimization otsu plugin point-spread function projection protocol PSF python registration release Ripley’s K function roi script scripting segmentation sequence smoothing spatial distribution spot spot count statistics surface synthetic threshold toolbox tools track processor tracking tutorial warping wavelet transform wavelets widefield workbook XLS output Search for: Plugin Script Protocol FAQ Forum Topic Article 3-D 3D 3D coordinates alignment basics batch processing Calcium cell tracking CLEM colocalization comptage confocal connected components contribution convolution correlation deconvolution deformable registration denoising detection detector developer displacements distance map export ezplug feature detection feature matching filtering fluorescence gui headless helper HSV visualisation image process ImageJ intensity mask maven measurement MHT microscopy monitoring morphology multiple hypothesis tracking non rigid registration operator optimization otsu plugin point-spread function projection protocol PSF python registration release Ripley’s K function roi script scripting segmentation sequence smoothing spatial distribution spot spot count statistics surface synthetic threshold toolbox tools track processor tracking tutorial warping wavelet transform wavelets widefield workbook XLS output Plugins How to contribute to Icy? All these features, right out of the box Providing software resources to visualize, annotate and quantify bioimaging data Plugins Easily write, share, search and install any plugin from the community directly from Icy Graphical Programming With protocols you can graphically design the workflow of plugins and scripts to be executed Script Editor Easily write scripts in javascript or python with the integrated script editor Cross-Platform Works natively on Windows, Linux and MacOS (Java required). Sharing Rate and comment plugins, give support, write tutorials and articles about what you are doing with Icy And more! Interactive widgets, interface builder, OpenCL, 3D data visualization, workspaces. Latest Resources Plugin 23 Feb 2024 MultiSPOTS by @ Frederic Marion-Poll Protocol 16 Jun 2023 ROI intensity XLS export over frames and slices by @ Stephane Dallongeville Protocol 17 Jan 2023 Separate ROIs with watershed by @ Stephane Dallongeville Protocol 13 Jan 2023 Flatten image in RGB (screenshot) and save it in JPG by @ Stephane Dallongeville Plugin 18 Nov 2022 Nashorn for Icy by @ Stephane Dallongeville Upcoming Trainings & Events Training 31 Oct 2017 Level 2: Protocols / Batch processing / Script (fr) by @ Fabrice de Chaumont Training 31 Oct 2017 Level 1: Introduction a Icy (fr) by @ Fabrice de Chaumont Training 07 Feb 2017 Level 2: Protocols & Scripts with Icy (fr) by @ Fabrice de Chaumont Training 07 Feb 2017 Level 1: Introduction to Icy (fr) by @ Fabrice de Chaumont Training 07 Dec 2015 Level 2: Protocol & Script (en) by @ Fabrice de Chaumont View all Icy is founded by Institut Pasteur France BioImaging Resources Plugins Protocols Scripts Get Involved Contributors Information Trainings Join Icy Support Forum Articles FAQ Ask for help About Aknowledgements Bioimage Analysis Contributors Privacy Policy Credits Designed by Yhello contact Yhello is a digital creation agency based in Paris, created by former scientists passionate about the web. 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